Protocadherin
Alpha-1 (PCDHA1): A Key Regulator of Neural Connectivity and Synaptic Organization
Peddareddemma P., Adiga Usha S., Vasishta Sampara, Supriya P. and Augustine Alfred
J.
Res. J. Biotech.; Vol. 20(11); 225-232;
doi: https://doi.org/10.25303/2011rjbt2250232; (2025)
Abstract
Protocadherin Alpha-1 (PCDHA1) is a member of the protocadherin alpha subfamily,
which plays a critical role in neuronal self-recognition, synaptic specificity and
brain development. The PCDHA gene cluster, located on chromosome 5q31, undergoes
alternative splicing to produce a diverse array of adhesion molecules that mediate
cell-cell interactions. PCDHA1 is particularly implicated in neurodevelopmental
processes, including axonal guidance, synaptic connectivity and neuronal plasticity.
Dysregulation of PCDHA1 has been associated with psychiatric disorders, cognitive
deficits and neurodevelopmental abnormalities. A protein-protein interaction (PPI)
network for PCDHA1 was generated using STRING and functional enrichment analysis
was performed using Gene Ontology (GO) and Reactome Pathway databases. Clustering
algorithms (K-Means, MCL, DBSCAN) were applied to identify functionally distinct
protein modules. Subcellular localization analysis was conducted using the COMPARTMENTS
database to determine PCDHA1's intracellular distribution.
Network analysis revealed that PCDHA1 is highly associated with homophilic cell
adhesion (GO:0007156, p = 4.74E-06) and calcium ion binding (GO:0005509, p = 0.0019).
Clustering analysis identified distinct functional groups, with DBSCAN highlighting
a core subset of protocadherins with high connectivity. PCDHA1 is a crucial player
in neuronal network formation and synaptic maintenance. Its strong links to neurodevelopmental
and psychiatric disorders suggest that it may serve as a biomarker and potential
therapeutic target. Future studies should explore its regulatory mechanisms and
disease associations.
